Basic Information
Locus ID:
Sp4g17320.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3426480 | 3431633 | + | Sp4g17320.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 136,608.84 Da | 49.10 | 72.86 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 180 | 274 | 1.42382E-43 | - |
| CDD | cd13999 | STKc_MAP3K-like | 962 | 1218 | 2.08917E-107 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 957 | 1218 | 2.0E-60 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 192 | 274 | 4.9E-22 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 948 | 1217 | 8.73E-77 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 193 | 281 | 5.64E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1045 | 1236 | 3.5E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 195 | 276 | 7.0E-11 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 949 | 1044 | 9.1E-26 | - |
| SMART | SM00220 | serkin_6 | 956 | 1226 | 2.1E-57 | IPR000719 |
| SMART | SM00666 | PB1_new | 191 | 277 | 4.9E-32 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 956 | 1221 | 40.823952 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1080 | 1092 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 962 | 983 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1074 | 1092 | 2.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1038 | 1051 | 2.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1189 | 1211 | 2.5E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1145 | 1167 | 2.5E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 596 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_013628306.1 | PREDICTED: uncharacterized protein LOC106334552 [Brassica oleracea var. oleracea] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3B4Y6 | Protein kinase domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 GN=106334552 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology