Basic Information
Locus ID:
Sp4g17180.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ribosomal small subunit binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3386491 | 3386793 | + | Sp4g17180.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 11,642.08 Da | 24.84 | 73.00 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006391637.1 | putative F-box protein At3g20030 [Eutrema salsugineum] | 0 |
| Q9LT21 | F-box protein At3g19880 OS=Arabidopsis thaliana OX=3702 GN=At3g19880 PE=2 SV=1 | 0 | |
| TrEMBL | V4KNL3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10023848mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |