Basic Information
Locus ID:
Sp4g16570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
endonuclease activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 3126815 | 3127954 | + | Sp4g16570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 44,360.31 Da | 56.24 | 85.36 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 204 | 372 | 1.4E-43 | IPR006527 |
| Pfam | PF00646 | F-box domain | 6 | 42 | 5.4E-11 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 126 | 284 | 9.68E-6 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 143 | 1.83E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 57 | 1.1E-8 | - |
| SMART | SM00256 | fbox_2 | 6 | 45 | 3.6E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 105 | 332 | 4.2E-46 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 50 | 11.775988 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22730.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_006406014.2 | LOW QUALITY PROTEIN: putative F-box only protein 9 [Eutrema salsugineum] | 0 |
| Q9LUI8 | Putative F-box/kelch-repeat protein At3g22730 OS=Arabidopsis thaliana OX=3702 GN=At3g22730 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6D2L7W0 | F-box domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS47903 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |