Basic Information
Locus ID:
Sp4g15920.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2892204 | 2894192 | - | Sp4g15920.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 72,617.33 Da | 47.03 | 90.89 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 196 | 238 | 0.0016 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 376 | 635 | 2.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 345 | 638 | 1.66E-62 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 434 | 649 | 2.2E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 329 | 432 | 2.6E-16 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 194 | 237 | 9.321362 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 364 | 654 | 30.972553 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 268 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_009141328.1 | protein LYK5 [Brassica rapa] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6D2IE12 | Protein kinase domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS12403 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology