Basic Information
Locus ID:
Sp4g15370.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc knuckle (CCHC-type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2684109 | 2686673 | + | Sp4g15370.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 63,516.65 Da | 54.62 | 69.24 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14352 | UBA_DCN1 | 213 | 248 | 2.85362E-9 | - |
| CDD | cd14273 | UBA_TAP-C_like | 91 | 122 | 1.8005E-5 | - |
| CDD | cd14273 | UBA_TAP-C_like | 13 | 36 | 0.003233 | - |
| Pfam | PF14555 | UBA-like domain | 86 | 124 | 3.2E-7 | - |
| Pfam | PF14555 | UBA-like domain | 212 | 249 | 2.0E-8 | - |
| Pfam | PF14555 | UBA-like domain | 335 | 371 | 2.0E-8 | - |
| SUPERFAMILY | SSF46934 | UBA-like | 83 | 123 | 8.64E-5 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 211 | 249 | 7.02E-7 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 334 | 374 | 1.22E-5 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 81 | 124 | 1.6E-8 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 334 | 374 | 1.4E-7 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 206 | 255 | 1.5E-8 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 446 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 85 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33000.1 | ubiquitin-associated (UBA)/TS-N domain-containing protein-related. | 0 |
| RefSeq | XP_024004123.1 | uncharacterized protein LOC18027607 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MH50 | UBA domain-containing protein (Fragment) OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017579mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G33000.1, AT2G33010.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10017579m.g.v1.0, Thhalv10017728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g15370.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB06g022110.2N, BniB06g022130.2N, BniB06g022140.2N ... |