Basic Information
Locus ID:
Sp4g15180.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2580087 | 2581238 | - | Sp4g15180.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 26,929.26 Da | 49.99 | 71.40 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 23 | 109 | 1.4E-15 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 17 | 122 | 4.84E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 13 | 119 | 5.3E-22 | IPR036431 |
| SMART | SM00501 | bright_3 | 21 | 114 | 4.7E-19 | IPR001606 |
| SMART | SM01014 | ARID_2 | 17 | 109 | 6.4E-18 | - |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 113 | 21.822063 | IPR001606 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 229 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006410411.2 | high mobility group B protein 15 [Eutrema salsugineum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | V4M6E8 | ARID domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10017860mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology