Basic Information
Locus ID:
Sp4g15160.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ubiquitin-conjugating enzyme E2, catalytic domain homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2573658 | 2574979 | - | Sp4g15160.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 15,156.15 Da | 41.92 | 96.69 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 42 | 108 | 5.4E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 43 | 111 | 1.74E-14 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 20 | 114 | 1.5E-15 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 117 | 12.255843 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32790.1 | Ubiquitin-conjugating enzyme family protein. | 0 |
| RefSeq | XP_013627269.1 | PREDICTED: SUMO-conjugating enzyme UBC9 [Brassica oleracea var. oleracea] | 0 |
| Q8S920 | Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5A PE=2 SV=1 | 0 | |
| TrEMBL | A0A397ZYR5 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA03T11097Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G32790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10017672m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g15150.v2.2, Sp4g15160.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g020630.2N |