Basic Information
Locus ID:
Sp4g15040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2533992 | 2539451 | + | Sp4g15040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 82,489.36 Da | 50.60 | 64.51 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 474 | 759 | 2.65045E-73 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 725 | 759 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 642 | 676 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 559 | 596 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 552 | 4.2E-6 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 1.2E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 485 | 510 | 6.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 475 | 759 | 1.9E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 604 | 759 | 8.8E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 457 | 603 | 1.2E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 513 | 552 | 2.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 638 | 676 | 9.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 596 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 510 | 3.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 679 | 718 | 1.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 2.0E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 720 | 759 | 7.8E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 563 | 598 | 8.57106 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 520 | 552 | 10.706503 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 563 | 605 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 645 | 685 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 478 | 513 | 8.966513 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.821852 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 727 | 759 | 12.024679 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 478 | 519 | 11.477578 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 520 | 552 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 727 | 759 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 645 | 680 | 8.755605 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 497 | 511 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 539 | 553 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 497 | 511 | 6.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 746 | 759 | 6.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 380 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.1 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_013692130.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Brassica napus] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A1J3HI85 | Transcriptional corepressor LEUNIG OS=Noccaea caerulescens OX=107243 GN=LE_TR3065_c0_g1_i1_g.10140 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology