Basic Information
Locus ID:
Sp4g14480.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
CCR4-associated factor 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2317529 | 2318765 | - | Sp4g14480.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 31,471.45 Da | 33.93 | 87.09 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 160 | 244 | 2.4E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 15 | 137 | 2.0E-12 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 12 | 266 | 1.52E-89 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 2 | 270 | 4.0E-102 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_006294779.1 | probable CCR4-associated factor 1 homolog 7 [Capsella rubella] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | R0FXE0 | poly(A)-specific ribonuclease OS=Capsella rubella OX=81985 GN=CARUB_v10023830mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology