Basic Information
Locus ID:
Sp4g14340.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2264721 | 2265934 | + | Sp4g14340.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.74 | 30,611.26 Da | 45.68 | 109.34 | 0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 224 | 265 | 4.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 269 | 1.18E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 202 | 271 | 4.0E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 224 | 265 | 2.3E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 224 | 265 | 10.984472 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80400.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013691441.2 | E3 ubiquitin-protein ligase At1g12760 [Brassica napus] | 0 |
| TrEMBL | A0A3P6C8Q7 | RING-type domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC4T23314H PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g14340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g021050.2N |