Basic Information
Locus ID:
Sp4g14160.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 2196106 | 2197841 | - | Sp4g14160.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 61,805.09 Da | 48.66 | 64.05 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 124 | 174 | 8.71475E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 194 | 257 | 6.0E-16 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 203 | 1.71E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 276 | 319 | 8.67E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 264 | 2.12E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 119 | 204 | 3.5E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 253 | 498 | 1.1E-69 | - |
| SMART | SM00647 | ibrneu5 | 194 | 257 | 1.2E-22 | IPR002867 |
| SMART | SM00184 | ring_2 | 124 | 164 | 0.2 | IPR001841 |
| SMART | SM00184 | ring_2 | 284 | 323 | 0.5 | IPR001841 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 244 | 257 | 8.614303 | IPR001878 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 120 | 335 | 45.337067 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 170 | 9.509172 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 531 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 531 | - | - |
| Coils | Coil | Coil | 363 | 383 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013747187.2 | probable E3 ubiquitin-protein ligase ARI10 [Brassica napus] | 0 |
| Q9SKC2 | Probable E3 ubiquitin-protein ligase ARI11 OS=Arabidopsis thaliana OX=3702 GN=ARI11 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078JNK7 | RBR-type E3 ubiquitin transferase OS=Brassica napus OX=3708 GN=BnaAnng26970D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology