Basic Information
Locus ID:
Sp4g12780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Protein kinase, catalytic domain (InterPro IPR000719), Serine threonine-protein kinase-like domain (InterPro IPR017442), Protein kinase-like domain (InterPro IPR011009), Serine threonine-protein kinase, active site (InterPro IPR008271)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1606467 | 1607618 | + | Sp4g12780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.37 | 43,170.58 Da | 49.28 | 77.31 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 7 | 281 | 3.7E-49 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 7 | 284 | 1.78E-63 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 339 | 2.0E-59 | - |
| SMART | SM00220 | serkin_6 | 5 | 281 | 3.0E-57 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 5 | 281 | 40.173786 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 134 | 146 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G41930.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006411462.2 | mitogen-activated protein kinase kinase kinase 17 [Eutrema salsugineum] | 0 |
| F4HRJ4 | Mitogen-activated protein kinase kinase kinase 3 OS=Arabidopsis thaliana OX=3702 GN=MAPKKK3 PE=1 SV=1 | 0 | |
| TrEMBL | V4LQM9 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016824mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 9 | AT2G05060.1, AT2G34290.1, AT2G41910.1, AT2G41920.1 ... |
| Brassicaceae | Eutrema salsugineum | 17 | Thhalv10000714m.g.v1.0, Thhalv10012027m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 8 | Sp1g33950.v2.2, Sp2g03310.v2.2, Sp4g12780.v2.2 ... |
| Brassicaceae | Brassica nigra | 17 | BniB01g003760.2N, BniB06g001160.2N, BniB06g001430.2N ... |
| Casuarinaceae | Casuarina glauca | 2 | Cgl09G0332, Cgl09G0845 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2093 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13161 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3444 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000016l.86 |