Basic Information
Locus ID:
Sp4g12680.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1562218 | 1564946 | + | Sp4g12680.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 68,088.23 Da | 44.07 | 83.06 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF117281 | Kelch motif | 8 | 180 | 3.92E-14 | IPR015915 |
| SUPERFAMILY | SSF117281 | Kelch motif | 293 | 569 | 8.37E-27 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 2 | 133 | 3.8E-9 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 272 | 556 | 2.2E-19 | IPR015915 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_006410043.2 | F-box/kelch-repeat protein At4g38940 [Eutrema salsugineum] | 0 |
| Q9SVJ9 | F-box/kelch-repeat protein At4g38940 OS=Arabidopsis thaliana OX=3702 GN=At4g38940 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6D2JLP9 | F-box domain-containing protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS25323 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Eutrema salsugineum | 31 | Thhalv10002293m.g.v1.0, Thhalv10015844m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g12680.v2.2, Sp5g22490.v2.2 |
| Brassicaceae | Brassica nigra | 12 | BniB01g013190.2N, BniB01g013200.2N, BniB01g013210.2N ... |