Basic Information
Locus ID:
Sp4g11890.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin fusion degradation
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1208790 | 1211110 | + | Sp4g11890.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 34,803.86 Da | 44.76 | 65.60 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 8 | 179 | 6.3E-79 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 104 | 177 | 8.6E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 103 | 1.6E-43 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 294 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 294 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G29070.2 | Ubiquitin fusion degradation UFD1 family protein. | 0 |
| RefSeq | XP_006409949.1 | ubiquitin fusion degradation protein 1 homolog isoform X2 [Eutrema salsugineum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | V4M8K0 | Ubiquitin fusion degradation protein 1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016960mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology