Basic Information
Locus ID:
Sp4g11730.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1129222 | 1129625 | + | Sp4g11730.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 13,692.09 Da | 49.27 | 100.56 | 0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 120 | 2.7E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 119 | 6.2E-7 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_013635575.1 | PREDICTED: RING-H2 finger protein ATL72 [Brassica oleracea var. oleracea] | 0 |
| TrEMBL | A0A397ZMU8 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA04T17762Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009927m.g.v1.0, Thhalv10023843m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g06310.v2.2, Sp4g11730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014960.2N, BniB03g002300.2N |