Basic Information
Locus ID:
Sp4g11660.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1084459 | 1086893 | - | Sp4g11660.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 72,079.99 Da | 45.96 | 101.25 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 261 | 303 | 3.12575E-26 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 472 | 510 | 3.1E-8 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 387 | 427 | 1.2E-8 | IPR000225 |
| Pfam | PF04564 | U-box domain | 258 | 327 | 3.2E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 245 | 333 | 2.72E-31 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 358 | 641 | 9.7E-51 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 352 | 537 | 1.3E-37 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 538 | 654 | 4.7E-16 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 7 | 119 | 8.7E-8 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 256 | 330 | 9.3E-31 | IPR013083 |
| SMART | SM00185 | arm_5 | 387 | 428 | 5.5E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 429 | 470 | 80.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 553 | 593 | 28.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 6.3E-34 | IPR003613 |
| SMART | SM00185 | arm_5 | 471 | 511 | 0.022 | IPR000225 |
| SMART | SM00185 | arm_5 | 512 | 552 | 0.67 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 398 | 441 | 12.3724 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 44.398335 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 523 | 565 | 8.9424 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 482 | 524 | 8.6624 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 356 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28830.1 | PLANT U-BOX 12. | 0 |
| RefSeq | XP_006409918.1 | U-box domain-containing protein 12 isoform X1 [Eutrema salsugineum] | 0 |
| Q9ZV31 | U-box domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=PUB12 PE=2 SV=1 | 0 | |
| TrEMBL | V4NWX1 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016364mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology