Basic Information
Locus ID:
Sp4g11550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 1015178 | 1016820 | - | Sp4g11550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 38,361.51 Da | 30.41 | 90.87 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 198 | 353 | 2.73902E-76 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 172 | 1.04599E-71 | - |
| Pfam | PF00190 | Cupin | 10 | 157 | 1.5E-31 | IPR006045 |
| Pfam | PF00190 | Cupin | 196 | 338 | 1.5E-24 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 10 | 345 | 6.73E-50 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 356 | 4.5E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 187 | 7.2E-36 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 195 | 339 | 6.0E-15 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 157 | 1.4E-37 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 276 | 291 | 1.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 316 | 333 | 1.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 294 | 312 | 1.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 258 | 274 | 1.0E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 211 | 231 | 1.0E-13 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_013651816.2 | glutelin type-D 1 [Brassica napus] | 0 |
| Q8GZP6 | 11S globulin seed storage protein Ana o 2.0101 (Fragment) OS=Anacardium occidentale OX=171929 PE=1 SV=1 | 0 | |
| TrEMBL | A0A816YS67 | 11S globulin OS=Brassica napus OX=3708 GN=DARMORV10_A07P19180.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology