Basic Information
Locus ID:
Sp4g10800.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 556851 | 563067 | - | Sp4g10800.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 118,527.10 Da | 44.24 | 73.14 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 630 | 680 | 2.2E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 408 | 463 | 4.3E-12 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 783 | 839 | 1.46E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 948 | 1053 | 1.24E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 690 | 742 | 8.84E-14 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 784 | 845 | 4.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 686 | 773 | 9.1E-16 | IPR013083 |
| Gene3D | G3DSA:3.40.630.30 | - | 886 | 1055 | 9.0E-7 | - |
| SMART | SM00249 | PHD_3 | 696 | 737 | 7.5E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 785 | 841 | 0.019 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 694 | 739 | 9.9083 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 697 | 736 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 517 | 594 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 575 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 57 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 335 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 249 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_006409814.1 | uncharacterized protein LOC18027447 [Eutrema salsugineum] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M880 | PHD-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016165mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology