Basic Information
Locus ID:
Sp4g10770.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 535514 | 540394 | - | Sp4g10770.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.72 | 96,689.16 Da | 59.61 | 63.76 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 800 | 838 | 6.06933E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 798 | 842 | 6.7E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 799 | 845 | 3.77E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 776 | 850 | 2.2E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 800 | 839 | 10.468117 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 129 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 144 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 404 | - | - |
| Coils | Coil | Coil | 419 | 439 | - | - |
| Coils | Coil | Coil | 729 | 749 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27950.1 | Ring/U-Box superfamily protein. | 0 |
| RefSeq | XP_006409810.1 | uncharacterized protein LOC18027443 isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4MFE5 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10016236mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology