Basic Information
Locus ID:
Sp4g10020.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
domain associated with HOX domains
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-6 | 111652 | 115027 | - | Sp4g10020.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 51,211.11 Da | 44.37 | 70.77 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00086 | homeodomain | 250 | 311 | 1.31864E-12 | IPR001356 |
| Pfam | PF07526 | Associated with HOX | 88 | 210 | 2.3E-37 | IPR006563 |
| Pfam | PF05920 | Homeobox KN domain | 267 | 306 | 2.6E-17 | IPR008422 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | 251 | 317 | 2.69E-17 | IPR009057 |
| Gene3D | G3DSA:1.10.10.60 | - | 244 | 323 | 6.7E-30 | - |
| SMART | SM00389 | HOX_1 | 250 | 314 | 1.1E-9 | IPR001356 |
| SMART | SM00574 | prehox3 | 75 | 212 | 7.5E-49 | IPR006563 |
| ProSiteProfiles | PS50071 | 'Homeobox' domain profile. | 247 | 310 | 12.276461 | IPR001356 |
| Coils | Coil | Coil | 144 | 171 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27220.1 | BEL1-like homeodomain 5. | 0 |
| RefSeq | XP_013747083.2 | BEL1-like homeodomain protein 5 [Brassica napus] | 0 |
| Q8S897 | BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana OX=3702 GN=BLH5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3P6CTZ7 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA04T17646Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg15144, jg16416, jg31918, jg3659, jg37633 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_15244, gene_6857 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah003143, Ah027732 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g098400, BVRB_7g171150 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg15713, Sbi_jg26482, Sbi_jg34081, Sbi_jg56516 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg13740, Seu_jg15016 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001809 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51467, Sgl56755 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000006165, gene:ENSEOMG00000006370 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0011050, CQ.Regalona.r1.5BG0011560 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055720, pistato.v30276580 |
| Apiaceae | Apium graveolens | 2 | Ag10G02090, Ag3G00670 |
| Arecaceae | Cocos nucifera | 2 | COCNU_15G001270, scaffold019717G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703148 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.137.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri16G01672, Ftri2G17350, FtriNA24358 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35940.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016349m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp4g10020.v2.2, Sp4g18190.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g008450.2N, BniB06g008200.2N, BniB08g022650.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0790, Ceq05G1875 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0897, Cgl05G1866 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g28650 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-448, nbisL1-mrna-8523 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1904 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015698 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G28605 |
| Poaceae | Echinochloa crus-galli | 4 | AH04.320, BH04.349, CH04.351, CH07.1383 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0675600, gene-QOZ80_9BG0699380 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0350220.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064867 |
| Poaceae | Oryza coarctata | 4 | Oco21G001660, Oco22G002510, Oco23G002260, Oco24G001810 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G059900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103895, Pt_Chr0104289 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr07G020940, Chr16G009890, Chr17G008880, Chr31G001270 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G182900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG032040, gene_TRIDC4BG017720 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G200800.1, TraesCS4B02G114600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb202140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-27100, nbis-gene-53957 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17597, Zma_g18440 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG04.2780, evm.TU.LG16.885, evm.TU.LG19.1123 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21300 |
| Rhizophoraceae | Bruguiera sexangula | 4 | evm.TU.Scaffold_13_RagTag.544, evm.TU.Scaffold_1_RagTag.1333 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-30542, nbisL1-mrna-4134, nbisL1-mrna-6266 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-18165, nbisL1-mrna-6680, nbisL1-mrna-924 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10158, nbisL1-mrna-15933, nbisL1-mrna-4110 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000009l.610, evm.TU.utg000015l.289 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00004864, Maker00015402, Maker00016510 |
| Rhizophoraceae | Rhizophora apiculata | 6 | nbisL1-mrna-12519, nbisL1-mrna-18406, nbisL1-mrna-19789 ... |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-13509, nbisL1-mrna-15250, nbisL1-mrna-5694 |
| Salicaceae | Populus euphratica | 5 | populus_peu02468, populus_peu12409, populus_peu25963 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132600640, gene-LOC132603956, gene-LOC132625922 |
| Solanaceae | Solanum chilense | 2 | SOLCI002001000, SOLCI007110400 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107004672, gene-LOC107008001, gene-LOC107023459 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.26373_chr11_+, gene_12200 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G1679, TC05G2739 |
| Zosteraceae | Zostera marina | 1 | Zosma02g01800.v3.1 |