Basic Information
Locus ID:
Sp4g09590.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-4 | 1083435 | 1086806 | - | Sp4g09590.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 39,968.41 Da | 38.33 | 68.14 | -0.76 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 130 | 201 | 2.88744E-8 | - |
| Pfam | PF00789 | UBX domain | 126 | 194 | 1.5E-4 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 119 | 201 | 9.04E-12 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 117 | 205 | 1.7E-9 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 124 | 204 | 15.624714 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 289 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 267 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G59550.1 | UBX domain-containing protein. | 0 |
| RefSeq | XP_018481730.1 | PREDICTED: putative plant UBX domain-containing protein 14 [Raphanus sativus] | 0 |
| P0DKI4 | Putative plant UBX domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUX14 PE=5 SV=1 | 0 | |
| TrEMBL | A0A6J0NB41 | putative plant UBX domain-containing protein 14 OS=Raphanus sativus OX=3726 GN=LOC108852739 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 123 | Sp1g29790.v2.2, Sp1g29840.v2.2, Sp1g29850.v2.2 ... |