Basic Information
Locus ID:
Sp4g05040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
protein ubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 1590763 | 1591860 | - | Sp4g05040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 41,860.78 Da | 58.55 | 88.30 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 165 | 204 | 9.6E-8 | IPR006652 |
| Pfam | PF00646 | F-box domain | 25 | 68 | 1.9E-8 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 76 | 333 | 5.23E-29 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 67 | 7.06E-9 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 82 | 331 | 2.1E-16 | IPR015915 |
| SMART | SM00256 | fbox_2 | 29 | 69 | 2.6E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 23 | 71 | 8.543671 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44630.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_024006006.1 | LOW QUALITY PROTEIN: F-box/kelch-repeat protein At2g44700 [Eutrema salsugineum] | 0 |
| O80502 | F-box/kelch-repeat protein At2g44630 OS=Arabidopsis thaliana OX=3702 GN=At2g44630 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3P6CII4 | F-box domain-containing protein (Fragment) OS=Brassica campestris OX=3711 GN=BRAA04T17569Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G44630.1, AT2G44700.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10000664m.g.v1.0, Thhalv10018745m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g03450.v2.2, Sp4g05040.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g017790.2N, BniB08g043110.2N |