Basic Information
Locus ID:
Sp4g04960.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 1562541 | 1563137 | - | Sp4g04960.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.19 | 23,019.25 Da | 53.89 | 91.97 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 147 | 189 | 3.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 135 | 194 | 3.76E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 197 | 1.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 188 | 3.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 189 | 12.238477 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009140856.1 | RING-H2 finger protein ATL60-like [Brassica rapa] | 0 |
| Q5Z5F2 | E3 ubiquitin-protein ligase Os06g0535400 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0535400 PE=2 SV=1 | 0 | |
| TrEMBL | A0A397ZL93 | RING-type E3 ubiquitin transferase OS=Brassica campestris OX=3711 GN=BRAA04T17567Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT2G24285.1, AT2G24460.1, AT2G24480.1, AT2G25565.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000562m.g.v1.0, Thhalv10003018m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g03480.v2.2, Sp4g04960.v2.2, SpUn0364_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g017830.2N, BniB01g019000.2N, BniB01g019130.2N ... |