Basic Information
Locus ID:
Sp4g04880.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box protein At1g67390
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 1526635 | 1528655 | + | Sp4g04880.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 54,780.09 Da | 42.59 | 93.97 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 40 | 72 | 2.2E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 149 | 287 | 9.68E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 38 | 93 | 1.7E-9 | IPR036047 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 38 | 86 | 8.729132 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67390.1 | F-box family protein. | 0 |
| RefSeq | XP_006417837.2 | putative F-box protein At1g67390 [Eutrema salsugineum] | 0 |
| Q9FYF4 | Putative F-box protein At1g67390 OS=Arabidopsis thaliana OX=3702 GN=At1g67390 PE=4 SV=1 | 0 | |
| TrEMBL | V4KEL3 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10009850mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 6 | AT1G67390.1, AT1G78470.1, AT1G80960.2, AT3G43410.1 ... |
| Brassicaceae | Eutrema salsugineum | 15 | Thhalv10002355m.g.v1.0, Thhalv10002356m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 6 | Sp1g05910.v2.2, Sp2g01400.v2.2, Sp4g04880.v2.2 ... |
| Brassicaceae | Brassica nigra | 25 | BniB01g033320.2N, BniB02g037670.2N, BniB03g057940.2N ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28740 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.3233_chr01_+ |