Basic Information
Locus ID:
Sp4g04780.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
EBF1
Description:
Ein3-binding F box protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 1460052 | 1462272 | - | Sp4g04780.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 67,052.78 Da | 41.09 | 106.15 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 64 | 104 | 6.4E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 205 | 228 | 0.0039 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 230 | 254 | 0.18 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 549 | 568 | 0.62 | IPR001611 |
| SUPERFAMILY | SSF81383 | F-box domain | 63 | 101 | 1.44E-8 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 323 | 627 | 6.54E-27 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 166 | 407 | 1.55E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 231 | 429 | 9.0E-35 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 432 | 630 | 3.7E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 148 | 230 | 1.7E-18 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 58 | 105 | 2.8E-7 | - |
| SMART | SM00367 | LRR_CC_2 | 546 | 570 | 0.076 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 520 | 545 | 10.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 67 | 106 | 3.3E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 389 | 414 | 150.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 205 | 230 | 2.2E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 337 | 362 | 0.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 231 | 256 | 2.6E-6 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 495 | 518 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 572 | 597 | 0.64 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 469 | 494 | 8.5 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 363 | 388 | 52.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 257 | 282 | 0.0032 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 179 | 204 | 0.03 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 443 | 468 | 9.6 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_006405190.1 | EIN3-binding F-box protein 1 [Eutrema salsugineum] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | V4M333 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000087mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology