Basic Information
Locus ID:
Sp4g04630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 1369243 | 1374407 | + | Sp4g04630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 83,816.83 Da | 38.46 | 85.55 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 536 | 569 | 2.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 467 | 720 | 2.24E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 724 | 1.0E-26 | IPR015943 |
| SMART | SM00320 | WD40_4 | 624 | 665 | 0.81 | IPR001680 |
| SMART | SM00320 | WD40_4 | 383 | 424 | 280.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 569 | 1.9E-7 | IPR001680 |
| SMART | SM00668 | ctlh | 37 | 95 | 0.86 | IPR006595 |
| SMART | SM00668 | ctlh | 221 | 279 | 0.17 | IPR006595 |
| SMART | SM00667 | Lish | 191 | 223 | 1.6E-6 | IPR006594 |
| SMART | SM00667 | Lish | 7 | 39 | 1.1E-5 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 537 | 572 | 12.413288 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 537 | 572 | 10.337415 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 191 | 223 | 10.936287 | IPR006594 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 7 | 39 | 10.452428 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 37 | 84 | 8.198521 | IPR006595 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 221 | 279 | 8.565821 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 726 | 749 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 749 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25420.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_006405207.2 | topless-related protein 4 isoform X2 [Eutrema salsugineum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A087GRS8 | Topless-related protein 4-like OS=Arabis alpina OX=50452 GN=AALP_AA6G261800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30250150 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G25420.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000070m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g04630.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g032840.2N |