Basic Information
Locus ID:
Sp4g03620.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 739323 | 743045 | - | Sp4g03620.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.21 | 70,836.82 Da | 55.56 | 70.51 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 169 | 474 | 9.74744E-165 | - |
| Pfam | PF01753 | MYND finger | 63 | 100 | 2.1E-11 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 170 | 473 | 3.6E-41 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 61 | 105 | 4.71E-13 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 168 | 481 | 8.05E-84 | IPR038765 |
| Gene3D | G3DSA:6.10.140.2220 | - | 53 | 105 | 1.2E-14 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 167 | 490 | 4.4E-88 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 170 | 476 | 47.956932 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 63 | 100 | 12.942193 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 171 | 186 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 63 | 100 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 548 | 591 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 630 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 481 | 514 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_020884871.1 | ubiquitin carboxyl-terminal hydrolase 19 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T2A559 | Peptidase C19 ubiquitin carboxyl-terminal hydrolase OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa04g004330 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology