Basic Information
Locus ID:
Sp4g03480.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 660802 | 661419 | + | Sp4g03480.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 23,235.48 Da | 66.04 | 91.27 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 142 | 185 | 1.4E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 193 | 7.54E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 188 | 1.5E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 184 | 0.0085 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 11.899158 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70910.1 | RING/U-box superfamily protein. Encodes DESPIERTO (DEP), a RING finger protein involved in ABA sensitivity during seed development. Regulates the expression of ABI3, and produces a complete loss of dormancy when mutated. | 0 |
| RefSeq | XP_009117228.1 | uncharacterized protein LOC103842367 [Brassica rapa] | 0 |
| Q91YL2 | E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3P5Y739 | (field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAA09T41023Z PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT2G24285.1, AT2G24460.1, AT2G24480.1, AT2G25565.1 ... |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10000562m.g.v1.0, Thhalv10003018m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp4g03480.v2.2, Sp4g04960.v2.2, SpUn0364_0010.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g017830.2N, BniB01g019000.2N, BniB01g019130.2N ... |