Basic Information
Locus ID:
Sp4g03400.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 624905 | 628052 | - | Sp4g03400.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 86,038.91 Da | 54.99 | 78.35 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 20 | 172 | 4.70056E-64 | - |
| Pfam | PF00582 | Universal stress protein family | 21 | 146 | 3.7E-10 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 469 | 725 | 4.4E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 470 | 727 | 5.8E-66 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 21 | 146 | 3.6E-10 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 20 | 157 | 8.3E-13 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 541 | 749 | 2.6E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 540 | 2.5E-21 | - |
| SMART | SM00220 | serkin_6 | 468 | 731 | 2.4E-27 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 468 | 731 | 35.029011 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 586 | 598 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 292 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 747 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 251 | - | - |
| Coils | Coil | Coil | 349 | 369 | - | - |
| Coils | Coil | Coil | 375 | 458 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24370.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_006404968.1 | U-box domain-containing protein 52 isoform X1 [Eutrema salsugineum] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A078H8E3 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=BnaA09g41420D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology