Basic Information
Locus ID:
Sp4g02870.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 356086 | 357547 | - | Sp4g02870.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 38,612.28 Da | 39.10 | 88.80 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 132 | 2.08966E-50 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 170 | 328 | 1.15509E-65 | - |
| Pfam | PF00190 | Cupin | 9 | 128 | 1.2E-26 | IPR006045 |
| Pfam | PF00190 | Cupin | 163 | 310 | 1.3E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 12 | 317 | 1.1E-42 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 166 | 336 | 2.8E-45 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 3 | 148 | 2.9E-26 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 3 | 155 | 6.6E-22 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 162 | 311 | 8.3E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 266 | 284 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 183 | 203 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 230 | 246 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 248 | 263 | 2.9E-12 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 288 | 305 | 2.9E-12 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_018449554.1 | PREDICTED: glutelin type-B 5-like [Raphanus sativus] | 0 |
| P07728 | Glutelin type-A 1 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A078FR85 | 11S globulin OS=Brassica napus OX=3708 GN=BnaA08g29100D PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology