Basic Information
Locus ID:
Sp4g02700.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
LYK4
Description:
Protein kinase family protein peptidoglycan-binding LysM domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-2 | 281788 | 283623 | - | Sp4g02700.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 67,037.16 Da | 39.18 | 91.70 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 187 | 232 | 0.0035541 | IPR018392 |
| Pfam | PF01476 | LysM domain | 122 | 167 | 1.4E-5 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 383 | 596 | 1.0E-36 | IPR001245 |
| Pfam | PF01476 | LysM domain | 189 | 233 | 4.9E-7 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 341 | 602 | 2.63E-58 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 186 | 244 | 5.4E-6 | IPR036779 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 106 | 182 | 1.6E-5 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 338 | 608 | 3.6E-57 | - |
| SMART | SM00257 | LysM_2 | 188 | 233 | 0.0011 | IPR018392 |
| SMART | SM00257 | LysM_2 | 121 | 167 | 2.7E-6 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 120 | 166 | 10.83509 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 282 | 601 | 30.491997 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 187 | 232 | 11.598962 | IPR018392 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 461 | 473 | - | IPR008266 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_013647949.2 | lysM domain receptor-like kinase 4 [Brassica napus] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X8ALZ4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_027932 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology