Basic Information
Locus ID:
Sp4g02100.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
casein kinase ii
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-1 | 986378 | 988543 | + | Sp4g02100.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 39,227.58 Da | 27.91 | 90.06 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14132 | STKc_CK2_alpha | 15 | 319 | 0.0 | - |
| Pfam | PF00069 | Protein kinase domain | 34 | 319 | 1.9E-65 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 6 | 322 | 2.4E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 107 | 331 | 3.5E-73 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 20 | 106 | 1.0E-43 | - |
| SMART | SM00220 | serkin_6 | 34 | 319 | 4.5E-75 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 34 | 319 | 43.283268 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 147 | 159 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 40 | 63 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko03008 (Ribosome biogenesis in eukaryotes)
map03008 (Ribosome biogenesis in eukaryotes)
map04064 (NF-kappa B signaling pathway)
ko04137 (Mitophagy - animal)
map04137 (Mitophagy - animal)
ko04139 (Mitophagy - yeast)
map04139 (Mitophagy - yeast)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04520 (Adherens junction)
map04520 (Adherens junction)
ko04712 (Circadian rhythm - plant)
map04712 (Circadian rhythm - plant)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23080.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006404777.1 | casein kinase II subunit alpha-3 [Eutrema salsugineum] | 0 |
| O64817 | Casein kinase II subunit alpha-3 OS=Arabidopsis thaliana OX=3702 GN=CKA3 PE=1 SV=1 | 0 | |
| TrEMBL | V4L780 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000237mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology