Basic Information
Locus ID:
Sp4g02070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-1 | 959634 | 961340 | + | Sp4g02070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 54,482.78 Da | 29.70 | 89.73 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 30 | 121 | 9.5E-6 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 205 | 424 | 9.3E-71 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 23 | 120 | 3.37E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 20 | 124 | 5.9E-9 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 101 | 9.496083 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 205 | 448 | 81.296951 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 453 | 479 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23050.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_009140445.1 | BTB/POZ domain-containing protein NPY4 [Brassica rapa] | 0 |
| O64814 | Phototropic-responsive NPH3 family protein NPY4 OS=Arabidopsis thaliana OX=3702 GN=NPY4 PE=2 SV=1 | 0 | |
| TrEMBL | M4ETQ5 | BTB/POZ domain-containing protein NPY4 OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology