Basic Information
Locus ID:
Sp4g00570.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-1 | 166890 | 170107 | + | Sp4g00570.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 51,676.10 Da | 29.82 | 81.04 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 9 | 314 | 3.28774E-79 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 84 | 121 | 8.4E-9 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 45 | 79 | 2.5E-5 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 340 | 438 | 3.0E-10 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 126 | 163 | 5.1E-8 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 211 | 291 | 1.0E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 315 | 8.11E-77 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 319 | 1.0E-127 | IPR015943 |
| SMART | SM00320 | WD40_4 | 2 | 37 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 124 | 163 | 7.8E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 317 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 40 | 79 | 8.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 193 | 232 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 82 | 121 | 7.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 237 | 276 | 5.3E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 244 | 285 | 15.35409 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 47 | 82 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 200 | 241 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 200 | 234 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 47 | 88 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 5 | 46 | 8.536777 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 131 | 164 | 15.320672 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 89 | 121 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 89 | 130 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 131 | 164 | 12.631039 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 244 | 276 | 12.156496 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 150 | 164 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 108 | 122 | 2.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 263 | 277 | 2.6E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 150 | 164 | 2.6E-8 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21390.1 | Coatomer, alpha subunit. | 0 |
| RefSeq | XP_006404586.1 | coatomer subunit alpha-1 [Eutrema salsugineum] | 0 |
| Q9SJT9 | Coatomer subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=At2g21390 PE=2 SV=1 | 0 | |
| TrEMBL | A0A816IJ08 | (rape) hypothetical protein OS=Brassica napus OX=3708 GN=DARMORV10_C03P78030.1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 4 | Sgl43929, Sgl43938, Sgl48695, Sgl48702 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30047220, pistato.v30159560 |
| Arecaceae | Cocos nucifera | 1 | COCNU_16G004000 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g00570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g017100.2N |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g36000 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g10250 |