Basic Information
Locus ID:
Sp4g00460.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch4-1 | 124410 | 127562 | + | Sp4g00460.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 40,375.33 Da | 53.77 | 71.61 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 47 | 218 | 7.4E-79 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 143 | 216 | 5.8E-34 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 36 | 141 | 9.0E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 351 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 321 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_006404567.1 | ubiquitin recognition factor in ER-associated degradation protein 1 [Eutrema salsugineum] | 0 |
| Q92890 | Ubiquitin recognition factor in ER-associated degradation protein 1 OS=Homo sapiens OX=9606 GN=UFD1 PE=1 SV=3 | 0 | |
| TrEMBL | V4L6Q6 | Ubiquitin fusion degradation protein 1 homolog OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10000246mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology