Basic Information
Locus ID:
Sp3g33590.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ABC transporter C family member 5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-6 | 1384511 | 1391264 | + | Sp3g33590.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 168,079.44 Da | 40.16 | 109.75 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 947 | 1241 | 3.24475E-93 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 621 | 821 | 1.32284E-103 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 595 | 1.52643E-101 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1264 | 1484 | 7.1106E-113 | - |
| Pfam | PF00005 | ABC transporter | 641 | 773 | 6.0E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 950 | 1190 | 4.7E-27 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 311 | 575 | 1.1E-25 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1283 | 1431 | 2.7E-29 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 934 | 1246 | 2.88E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1256 | 1496 | 2.27E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 296 | 603 | 2.62E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 618 | 843 | 6.23E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1250 | 1502 | 5.4E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 277 | 604 | 2.6E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 615 | 849 | 1.3E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 908 | 1247 | 9.2E-60 | IPR036640 |
| SMART | SM00382 | AAA_5 | 648 | 829 | 8.1E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1292 | 1477 | 5.4E-15 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1266 | 1500 | 17.427105 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 621 | 844 | 22.562466 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 310 | 587 | 35.282379 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 949 | 1219 | 36.499275 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 746 | 760 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_006408953.1 | ABC transporter C family member 5 [Eutrema salsugineum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4NUG4 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10001878mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology