halophFGD

Basic Information

Locus ID: Sp3g32590.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: F-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch3-6	904306	905503	-	Sp3g32590.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.42	41,929.46 Da	46.80	81.55	-0.22

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	37	67	7.2E-8	IPR001810
SUPERFAMILY	SSF50965	Galactose oxidase, central domain	87	297	2.48E-9	IPR011043
SUPERFAMILY	SSF81383	F-box domain	26	72	1.57E-8	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	37	75	7.2E-8	-
SMART	SM00256	fbox_2	38	78	0.0094	IPR001810
ProSiteProfiles	PS50181	F-box domain profile.	32	65	8.623154	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G18720.1	F-box family protein.
RefSeq	XP_009103403.1	F-box/kelch-repeat protein At3g18720 [Brassica rapa]
Swiss-Prot	Q9LSA5	F-box/kelch-repeat protein At3g18720 OS=Arabidopsis thaliana OX=3702 GN=At3g18720 PE=2 SV=1
TrEMBL	A0A8D9HM95	(field mustard) hypothetical protein OS=Brassica campestris OX=3711 GN=BRAPAZ1V2_A07P18190.2 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	7	jg15098, jg31952, jg32695, jg3612, jg9111, jg9220, jg9221
Aizoaceae	Mesembryanthemum crystallinum	13	gene_12262, gene_12268, gene_12270, gene_12272, gene_12281 ... gene_12284, gene_14497, gene_15166, gene_24776, gene_7287, gene_7302, gene_7304, gene_7306
Amaranthaceae	Atriplex hortensis	10	Ah008186, Ah008196, Ah008197, Ah008198, Ah008727, Ah008731 ... Ah031164, Ah038246, Ah038247, Ah038254
Amaranthaceae	Beta vulgaris	5	BVRB_4g087730, BVRB_4g088480, BVRB_4g088510, BVRB_5g110720 ... BVRB_7g159370
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2390, Sbi_jg34127
Amaranthaceae	Salicornia europaea	3	Seu_jg2385, Seu_jg4859, Seu_jg6545
Amaranthaceae	Suaeda aralocaspica	7	GOSA_00001157, GOSA_00003489, GOSA_00006067, GOSA_00006703 ... GOSA_00006704, GOSA_00018031, GOSA_00018032
Amaranthaceae	Suaeda glauca	39	Sgl02939, Sgl02941, Sgl02942, Sgl02999, Sgl03017, Sgl08109 ... Sgl08110, Sgl08112, Sgl08132, Sgl23346, Sgl23347, Sgl23352, Sgl23439, Sgl28463, Sgl28464, Sgl28469, Sgl28565, Sgl28740, Sgl32778, Sgl38065, Sgl52088, Sgl53883, Sgl55586, Sgl55593, Sgl57346, Sgl59140, Sgl59222, Sgl60801, Sgl60807, Sgl70858, Sgl71550, Sgl71551, Sgl72418, Sgl74131, Sgl74450, Sgl75126, Sgl75127, Sgl75960, Sgl77646
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000005404, gene:ENSEOMG00000037843 ... gene:ENSEOMG00000040961
Amaranthaceae	Chenopodium quinoa	7	CQ.Regalona.r1.4AG0022720, CQ.Regalona.r1.4BG0020720 ... CQ.Regalona.r1.4BG0020730, CQ.Regalona.r1.4BG0020740, CQ.Regalona.r1.6BG0016380, CQ.Regalona.r1.7AG0020820, CQ.Regalona.r1.7BG0024130
Anacardiaceae	Pistacia vera	3	pistato.v30010080, pistato.v30152740, pistato.v30275710
Apiaceae	Apium graveolens	2	Ag10G02051, Ag2G02442
Arecaceae	Cocos nucifera	3	COCNU_02G019880, COCNU_03G000840, COCNU_07G011580
Arecaceae	Phoenix dactylifera	2	gene-LOC103719377, gene-LOC120108904
Asparagaceae	Asparagus officinalis	10	AsparagusV1_01.214.V1.1, AsparagusV1_04.231.V1.1 ... AsparagusV1_04.3206.V1.1, AsparagusV1_04.3207.V1.1, AsparagusV1_06.302.V1.1, AsparagusV1_06.305.V1.1, AsparagusV1_07.312.V1.1, AsparagusV1_07.632.V1.1, AsparagusV1_10.92.V1.1, AsparagusV1_10.96.V1.1
Asteraceae	Flaveria trinervia	4	Ftri10G26809, Ftri12G04579, Ftri16G08217, Ftri3G06180
Brassicaceae	Arabidopsis thaliana	11	AT1G49360.1, AT1G57790.1, AT2G44735.1, AT3G18720.1 ... AT3G56470.1, AT4G00893.1, AT4G10660.1, AT4G10695.1, AT4G10700.1, AT4G12370.1, AT4G12382.1
Brassicaceae	Eutrema salsugineum	17	Thhalv10002259m.g.v1.0, Thhalv10006319m.g.v1.0 ... Thhalv10006387m.g.v1.0, Thhalv10015924m.g.v1.0, Thhalv10022459m.g.v1.0, Thhalv10023551m.g.v1.0, Thhalv10027612m.g.v1.0, Thhalv10028097m.g.v1.0, Thhalv10028157m.g.v1.0, Thhalv10028173m.g.v1.0, Thhalv10028260m.g.v1.0, Thhalv10028277m.g.v1.0, Thhalv10029151m.g.v1.0, Thhalv10029362m.g.v1.0, Thhalv10029466m.g.v1.0, Thhalv10029531m.g.v1.0, Thhalv10029532m.g.v1.0
Brassicaceae	Schrenkiella parvula	13	Sp2g05780.v2.2, Sp3g32580.v2.2, Sp3g32590.v2.2 ... Sp4g03050.v2.2, Sp5g06085.v2.2, Sp6g05180.v2.2, Sp6g05200.v2.2, Sp6g05210.v2.2, Sp6g05220.v2.2, Sp6g05700.v2.2, Sp6g05710.v2.2, Sp6g12720.v2.2, Sp7g03220.v2.2
Brassicaceae	Brassica nigra	19	BniB02g004970.2N, BniB02g015360.2N, BniB02g056730.2N ... BniB03g068410.2N, BniB05g032990.2N, BniB05g056330.2N, BniB05g057350.2N, BniB06g003060.2N, BniB07g045190.2N, BniB07g045220.2N, BniB08g030120.2N, BniB08g036750.2N, BniB08g036770.2N, BniB08g037190.2N, BniB08g037230.2N, BniB08g037240.2N, BniB08g048940.2N, BniB08g048950.2N, BniB08g071100.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq04G0678, Ceq05G0252, Ceq05G0708
Casuarinaceae	Casuarina glauca	5	Cgl04G0779, Cgl05G0622, Cgl05G0717, Cgl05G0718, Cgl05G0776
Malvaceae	Hibiscus hamabo Siebold & Zucc.	1	nbisL1-mrna-6281
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2028
Plantaginaceae	Plantago ovata	47	Pov_00005021, Pov_00005227, Pov_00005261, Pov_00005476 ... Pov_00005477, Pov_00007343, Pov_00007355, Pov_00011462, Pov_00012001, Pov_00012217, Pov_00012259, Pov_00012584, Pov_00012631, Pov_00013033, Pov_00013839, Pov_00014088, Pov_00014089, Pov_00014237, Pov_00014239, Pov_00014242, Pov_00014247, Pov_00014250, Pov_00014437, Pov_00014619, Pov_00014621, Pov_00014805, Pov_00015747, Pov_00016552, Pov_00016935, Pov_00016944, Pov_00016946, Pov_00016947, Pov_00019092, Pov_00019093, Pov_00021365, Pov_00026256, Pov_00026257, Pov_00026355, Pov_00027191, Pov_00028732, Pov_00028735, Pov_00028743, Pov_00033964, Pov_00036931, Pov_00037644, Pov_00038927, Pov_00040455
Plumbaginaceae	Limonium bicolor	1	Lb4G22263
Poaceae	Echinochloa crus-galli	6	AH01.4670, AH07.2152, BH07.2717, CH07.2014, CH08.1931 ... Contig181.98
Poaceae	Eleusine coracana subsp. coracana	10	gene-QOZ80_2BG0189050, gene-QOZ80_5AG0380730 ... gene-QOZ80_7AG0582520, gene-QOZ80_8AG0632720, gene-QOZ80_8AG0632730, gene-QOZ80_8BG0661710, gene-QOZ80_8BG0661720, gene-QOZ80_8BG0661740, gene-QOZ80_8BG0661750, gene-QOZ80_8BG0661770
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0080080.1.CDS1 ... HORVU.MOREX.r3.2HG0110020.1, HORVU.MOREX.r3.2HG0110040.1, HORVU.MOREX.r3.6HG0624880.1.CDS1, HORVU.MOREX.r3.6HG0624950.1.CDS1
Poaceae	Lolium multiflorum	4	gene-QYE76_018349, gene-QYE76_018351, gene-QYE76_026257 ... gene-QYE76_026489
Poaceae	Oryza coarctata	2	Oco05G005290, Oco16G009030
Poaceae	Oryza sativa	5	LOC_Os01g33920.1, LOC_Os07g48940.1, LOC_Os08g34820.1 ... LOC_Os08g34860.1, LOC_Os08g34890.1
Poaceae	Paspalum vaginatum	3	gene-BS78_02G397300, gene-BS78_09G046800, gene-BS78_K001800
Poaceae	Sporobolus alterniflorus	2	Chr14G004180, Chr21G003540
Poaceae	Thinopyrum elongatum	3	Tel2E01G206600, Tel2E01G207900, Tel2E01G208200
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG011060, gene_TRIDC2BG013560
Poaceae	Triticum aestivum	7	TraesCS2A02G095800.1, TraesCS2B02G111200.1 ... TraesCS2B02G111300.1, TraesCS2D02G094300.1, TraesCS6B02G394500.1, TraesCSU02G152400.1, TraesCSU02G214900.1.cds1
Portulacaceae	Portulaca oleracea	16	evm.TU.LG01.2173, evm.TU.LG03.2276, evm.TU.LG03.511 ... evm.TU.LG12.1209, evm.TU.LG13.775, evm.TU.LG13.777, evm.TU.LG13.805, evm.TU.LG13.806, evm.TU.LG13.808, evm.TU.LG13.829, evm.TU.LG14.1366, evm.TU.LG14.1367, evm.TU.LG17.1322, evm.TU.LG21.480, evm.TU.LG21.481, evm.TU.LG21.483
Posidoniaceae	Posidonia oceanica	4	gene.Posoc02g26490, gene.Posoc02g31610, gene.Posoc02g31630 ... gene.Posoc06g18590
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.1407, evm.TU.Scaffold_2_RagTag.2028
Rhizophoraceae	Carallia pectinifolia	8	nbisL1-mrna-2767, nbisL1-mrna-2772, nbisL1-mrna-2778 ... nbisL1-mrna-2806, nbisL1-mrna-2813, nbisL1-mrna-2815, nbisL1-mrna-4075, nbisL1-mrna-6454
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-4490
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-13690, nbisL1-mrna-4044
Rhizophoraceae	Kandelia candel	2	add.evm.TU.utg000009l.21, evm.TU.utg000016l.447
Rhizophoraceae	Kandelia obovata	1	Maker00017237
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-21116, nbisL1-mrna-21117, nbisL1-mrna-22412 ... nbisL1-mrna-7623
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-13363, nbisL1-mrna-13365, nbisL1-mrna-13582 ... nbisL1-mrna-2569
Salicaceae	Populus euphratica	4	populus_peu12502, populus_peu25868, populus_peu30355 ... populus_peu30356
Solanaceae	Lycium barbarum	5	gene-LOC132611036, gene-LOC132623171, gene-LOC132629765 ... gene-LOC132629827, gene-LOC132644663
Solanaceae	Solanum chilense	3	SOLCI000503500, SOLCI003028700, SOLCI007330500
Solanaceae	Solanum pennellii	9	gene-LOC107010037, gene-LOC107028507, gene-LOC107029875 ... gene-LOC107029907, gene-LOC107029922, gene-LOC107030430, gene-LOC107031668, gene-LOC114073958, gene-LOC114073959
Tamaricaceae	Reaumuria soongarica	10	MSTRG.17259_chr09_+, MSTRG.17268_chr09_-, MSTRG.4412_chr03_+ ... MSTRG.19680_chr11_-, MSTRG.19681_chr11_-, MSTRG.19805_chr11_+, STRG.1338_chr01_+, STRG.27579_chr04_+, STRG.31691_chr09_+, gene_11376
Tamaricaceae	Tamarix chinensis	6	TC02G2468, TC06G0364, TC06G0368, TC06G0370, TC06G0371 ... TC07G0845