Basic Information
Locus ID:
Sp3g32160.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-6 | 707401 | 707940 | + | Sp3g32160.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.09 | 20,423.71 Da | 61.39 | 90.33 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 107 | 150 | 4.8E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 157 | 2.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 155 | 1.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 108 | 149 | 3.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 108 | 150 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G18670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018438370.1 | PREDICTED: RING-H2 finger protein ATL56 [Raphanus sativus] | 0 |
| Q9ZV51 | RING-H2 finger protein ATL56 OS=Arabidopsis thaliana OX=3702 GN=ATL56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0JRR6 | RING-H2 finger protein ATL56 OS=Raphanus sativus OX=3726 GN=LOC108810780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology