Basic Information
Locus ID:
Sp3g30890.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-6 | 147845 | 152371 | + | Sp3g30890.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 121,227.49 Da | 41.62 | 90.68 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14136 | STKc_SRPK | 664 | 1052 | 4.6607E-170 | - |
| Pfam | PF13041 | PPR repeat family | 532 | 580 | 6.8E-9 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 323 | 370 | 3.0E-15 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 221 | 266 | 1.2E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 434 | 459 | 0.0089 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 891 | 1052 | 4.0E-21 | IPR000719 |
| Pfam | PF01535 | PPR repeat | 189 | 219 | 0.022 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 295 | 319 | 0.37 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 504 | 529 | 0.014 | IPR002885 |
| Pfam | PF00069 | Protein kinase domain | 676 | 815 | 7.4E-21 | IPR000719 |
| Pfam | PF01535 | PPR repeat | 396 | 423 | 0.0034 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 105 | 165 | 5.5E-4 | IPR002885 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 670 | 1053 | 3.74E-79 | IPR011009 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 466 | 646 | 5.8E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 273 | 373 | 9.6E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 168 | 272 | 1.9E-25 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 374 | 465 | 2.7E-14 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 28 | 167 | 6.2E-16 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 661 | 760 | 5.7E-119 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 729 | 1052 | 5.7E-119 | - |
| SMART | SM00220 | serkin_6 | 675 | 1052 | 7.0E-61 | IPR000719 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 396 | 423 | 4.6E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 224 | 251 | 2.4E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 361 | 387 | 6.6E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 504 | 532 | 0.0027 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 291 | 323 | 0.0023 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 571 | 604 | 2.1E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 325 | 359 | 1.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 189 | 223 | 1.8E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 536 | 568 | 1.7E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 187 | 221 | 11.027125 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 288 | 322 | 9.656963 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 568 | 602 | 11.345003 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 222 | 256 | 9.941957 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 323 | 357 | 12.802855 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 358 | 392 | 11.103854 | IPR002885 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 675 | 1052 | 33.304665 | IPR000719 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 498 | 532 | 9.711769 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 393 | 423 | 8.966401 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 533 | 567 | 10.47906 | IPR002885 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 681 | 704 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 802 | 814 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17530.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_018441385.1 | PREDICTED: SRSF protein kinase 1 [Raphanus sativus] | 0 |
| Q84VG6 | Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g17525 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7G2ECY5 | (thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS6966 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg34662 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6497 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018177 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056590 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15202, Sbi_jg56024 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26503 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00027749 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02222, Sgl07378 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000030064, gene:ENSEOMG00000045211 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0009180, CQ.Regalona.r1.3BG0009360 |
| Apiaceae | Apium graveolens | 1 | Ag3G01768 |
| Arecaceae | Cocos nucifera | 1 | scaffold020636G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120103774 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.429.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G22357 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G17525.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022597m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g30890.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g065500.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0723 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g08310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g13010 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2888 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013333 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb8G36056, Lb8G36059 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1654, evm.TU.LG11.1007 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.2202 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-16939 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5957 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11639 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00008315 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23116 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23702 |
| Salicaceae | Populus euphratica | 1 | populus_peu14041 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610154 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031224 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25127_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0871 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23520.v3.1 |