Basic Information
Locus ID:
Sp3g30840.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Encoded by
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-6 | 124308 | 125540 | - | Sp3g30840.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.23 | 46,254.25 Da | 44.48 | 71.12 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 2 | 73 | 4.2E-10 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 322 | 387 | 1.9E-10 | IPR025724 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 111 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G48050.1 | 0 | |
| RefSeq | XP_013615106.1 | PREDICTED: uncharacterized protein LOC106321369 [Brassica oleracea var. oleracea] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T1YAI4 | GAG-pre-integrase domain OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa07g027340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology