Basic Information
Locus ID:
Sp3g27900.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Vacuolar-sorting receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-5 | 1533510 | 1535648 | + | Sp3g27900.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 44,883.74 Da | 42.71 | 78.56 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 222 | 368 | 2.0E-5 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14740.1 | vaculolar sorting receptor 3. Encodes a vacuolar sorting receptor that participates in vacuolar sorting in vegetative tissues and in seeds. | 0 |
| RefSeq | XP_018493122.1 | PREDICTED: vacuolar-sorting receptor 3-like [Raphanus sativus] | 0 |
| O80977 | Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana OX=3702 GN=VSR3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7UZK0 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_034567 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 82 | Sp1g24500.v2.2, Sp1g24510.v2.2, Sp1g30380.v2.2 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20010 |