Basic Information
Locus ID:
Sp3g27100.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
SERK5
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-5 | 876737 | 880929 | + | Sp3g27100.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.59 | 68,067.08 Da | 48.07 | 97.66 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 289 | 560 | 2.5E-46 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 67 | 3.9E-10 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 143 | 162 | 0.39 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 203 | 7.29E-39 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 266 | 563 | 1.03E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 26 | 203 | 3.1E-55 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 257 | 364 | 6.1E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 365 | 582 | 1.9E-70 | - |
| SMART | SM00220 | serkin_6 | 288 | 562 | 5.0E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 288 | 572 | 37.050175 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 294 | 316 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 411 | 423 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G13790.1 | somatic embryogenesis receptor-like kinase 4. | 0 |
| RefSeq | XP_013598949.1 | PREDICTED: somatic embryogenesis receptor kinase 4-like isoform X1 [Brassica oleracea var. oleracea] | 0 |
| Q9SKG5 | Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=SERK4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8X8B6B4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_016215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology