Basic Information
Locus ID:
Sp3g26000.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-5 | 23268 | 28881 | + | Sp3g26000.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 55,472.61 Da | 44.63 | 68.98 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 388 | - | - |
| Coils | Coil | Coil | 102 | 122 | - | - |
| Coils | Coil | Coil | 57 | 86 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010424168.2 | PREDICTED: uncharacterized protein LOC104709216 [Camelina sativa] | 0 |
| TrEMBL | A0A8T1Z3C6 | Zinc finger CCHC-type OS=Arabidopsis thaliana x Arabidopsis arenosa OX=1240361 GN=ISN45_Aa06g038500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Schrenkiella parvula | 123 | Sp1g29790.v2.2, Sp1g29840.v2.2, Sp1g29850.v2.2 ... |