Basic Information
Locus ID:
Sp3g22480.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Protein of unknown function (DUF1644)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-2 | 550352 | 553152 | + | Sp3g22480.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 39,387.89 Da | 69.82 | 59.20 | -1.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 22 | 214 | 8.6E-75 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 188 | 2.8E-5 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 290 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 349 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24740.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_023641760.1 | uncharacterized protein LOC17891896 [Capsella rubella] | 0 |
| TrEMBL | R0HMI1 | Uncharacterized protein OS=Capsella rubella OX=81985 GN=CARUB_v10014073mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg35494, jg37770, jg37771, jg8626 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5355 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah028228 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g167100 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg26507, Sbi_jg34057 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg15037 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011952 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73788, Sgl77293 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008194, gene:ENSEOMG00000035818 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0010700, CQ.Regalona.r1.7BG0012880 |
| Apiaceae | Apium graveolens | 1 | Ag2G01260 |
| Arecaceae | Cocos nucifera | 2 | COCNU_07G009340, scaffold013426G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103714898, gene-LOC103717935, gene-LOC103720148 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_04.299.V1.1, AsparagusV1_07.1913.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G01817 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G24740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10002596m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g22480.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g035820.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G2018 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G2126 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g07000 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g05940, gene.Thate03g07710 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9748 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1526 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015115 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G13938 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0359170 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0096770.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_047990 |
| Poaceae | Oryza coarctata | 2 | Oco07G000630, Oco08G000730 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g04010.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G020300 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0306183 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G018470, Chr25G016100, Chr26G001300, Chr30G015210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G039900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG001150, gene_TRIDC2BG001090 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G011300.1.cds1, TraesCS2B02G010300.1 |
| Poaceae | Zea mays | 2 | Zm00001eb088970_P001, Zm00001eb419470_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-37410 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20845 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.474, evm.TU.LG04.287 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g15620 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1095 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21094 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8575 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-18612 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009812 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17262 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4969 |
| Salicaceae | Populus euphratica | 2 | populus_peu31114, populus_peu31130 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132610153 |
| Solanaceae | Solanum chilense | 3 | SOLCI005991200, SOLCI005991400, SOLCI005991500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107031226 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.403_chr01_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G0477 |
| Zosteraceae | Zostera marina | 2 | Zosma04g25840.v3.1, Zosma06g28990.v3.1 |