Basic Information
Locus ID:
Sp3g22450.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-2 | 541878 | 547475 | + | Sp3g22450.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 123,627.77 Da | 47.65 | 67.87 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 171 | 267 | 5.55897E-40 | - |
| CDD | cd13999 | STKc_MAP3K-like | 831 | 1088 | 4.85769E-107 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 829 | 1088 | 4.4E-61 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 184 | 266 | 8.1E-20 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 811 | 1087 | 6.23E-74 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 184 | 266 | 3.26E-17 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 818 | 912 | 3.0E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 913 | 1105 | 3.9E-52 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 186 | 267 | 4.2E-10 | - |
| SMART | SM00220 | serkin_6 | 825 | 1096 | 6.0E-55 | IPR000719 |
| SMART | SM00666 | PB1_new | 182 | 269 | 2.7E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 825 | 1096 | 39.905243 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 950 | 962 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 831 | 856 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1059 | 1081 | 4.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 944 | 962 | 4.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 907 | 920 | 4.0E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1015 | 1037 | 4.0E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 525 | 548 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 505 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24715.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_002883551.1 | probable serine/threonine-protein kinase DDB_G0267686 [Arabidopsis lyrata subsp. lyrata] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2BB34 | Protein kinase domain OS=Arabidopsis suecica OX=45249 GN=ISN44_As08g027980 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology