Basic Information
Locus ID:
Sp3g21250.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 7816343 | 7817479 | - | Sp3g21250.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 44,392.48 Da | 54.90 | 82.72 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 2 | 43 | 3.2E-9 | IPR001810 |
| Pfam | PF07734 | F-box associated | 200 | 362 | 3.5E-44 | IPR006527 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 102 | 307 | 2.62E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 130 | 5.89E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 39 | 1.2E-7 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 1.2E-9 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 102 | 321 | 1.6E-50 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 11.564033 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22730.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018435501.1 | PREDICTED: putative F-box/kelch-repeat protein At3g22730 [Raphanus sativus] | 0 |
| Q9LUI8 | Putative F-box/kelch-repeat protein At3g22730 OS=Arabidopsis thaliana OX=3702 GN=At3g22730 PE=4 SV=1 | 0 | |
| TrEMBL | A0A6J0JKI0 | putative F-box/kelch-repeat protein At3g22730 OS=Raphanus sativus OX=3726 GN=LOC108807753 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_01G005860 |
| Brassicaceae | Arabidopsis thaliana | 81 | AT1G11620.1, AT1G25141.1, AT1G50470.1, AT1G62270.1 ... |
| Brassicaceae | Eutrema salsugineum | 96 | Thhalv10000454m.g.v1.0, Thhalv10000467m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 15 | Sp1g20770.v2.2, Sp3g14050.v2.2, Sp3g15200.v2.2 ... |
| Brassicaceae | Brassica nigra | 83 | BniB01g038780.2N, BniB01g039020.2N, BniB01g039120.2N ... |