Basic Information
Locus ID:
Sp3g20740.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin protein ligase DRIP2-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 7561980 | 7563851 | + | Sp3g20740.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 23,137.52 Da | 55.71 | 85.34 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 7 | 47 | 5.9E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 61 | 2.1E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 96 | 7.6E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 7 | 47 | 6.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 7 | 48 | 11.736875 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 23 | 32 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23060.2 | - | 0 |
| RefSeq | XP_033144202.1 | probable E3 ubiquitin protein ligase DRIPH [Brassica rapa] | 0 |
| Q9LS86 | Probable E3 ubiquitin protein ligase DRIPH OS=Arabidopsis thaliana OX=3702 GN=At3g23060 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8X7W3A4 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_014633 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23060.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022423m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20730.v2.2, Sp3g20740.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB03g025000.2N, BniB03g025060.2N, BniB03g025070.2N ... |