Basic Information
Locus ID:
Sp3g20410.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box LRR-repeat kelch-repeat protein At1g11620
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 7357761 | 7358915 | + | Sp3g20410.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 44,540.26 Da | 33.20 | 92.55 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07734 | F-box associated | 205 | 378 | 4.3E-46 | IPR006527 |
| Pfam | PF12937 | F-box-like | 8 | 50 | 1.4E-6 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 39 | 328 | 7.98E-7 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 126 | 9.55E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 65 | 1.1E-5 | - |
| SMART | SM00256 | fbox_2 | 9 | 49 | 1.3E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 93 | 332 | 9.9E-51 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 50 | 10.716211 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G22650.2 | - | 0 |
| RefSeq | XP_006406140.1 | putative F-box protein At3g22650 [Eutrema salsugineum] | 0 |
| Q9LUJ6 | Putative F-box protein At3g22650 OS=Arabidopsis thaliana OX=3702 GN=At3g22650 PE=4 SV=1 | 0 | |
| TrEMBL | V4M5P0 | F-box domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10022403mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 7 | AT1G77650.1, AT1G77655.1, AT3G08750.1, AT3G10430.1 ... |
| Brassicaceae | Eutrema salsugineum | 9 | Thhalv10000601m.g.v1.0, Thhalv10015788m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g20410.v2.2, Sp6g23470.v2.2 |
| Brassicaceae | Brassica nigra | 17 | BniB01g054610.2N, BniB03g013050.2N, BniB03g013060.2N ... |