Basic Information
Locus ID:
Sp3g18620.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
F-box family protein-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch3-1 | 6626408 | 6630474 | - | Sp3g18620.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 44,247.06 Da | 47.33 | 74.56 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 21 | 48 | 2.2E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 21 | 96 | 4.58E-12 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 111 | 375 | 4.84E-7 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 9 | 91 | 7.1E-7 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 110 | 344 | 1.5E-17 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20620.1 | F-box family protein-related. | 0 |
| RefSeq | XP_020887307.1 | putative F-box protein At2g02030 isoform X2 [Arabidopsis lyrata subsp. lyrata] | 0 |
| TrEMBL | A0A8T2B9Q9 | F-box associated interaction domain OS=Arabidopsis suecica OX=45249 GN=ISN44_As08g022950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg19076, jg21476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20620.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022358m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g08190.v2.2, Sp3g18620.v2.2, Sp3g18660.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g043170.2N, BniB01g043700.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1238 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1376 |