halophFGD

Basic Information

Locus ID: Sp3g18520.v2.2

Species & Taxonomic ID: Schrenkiella parvula & 98039

Genome Assembly: v2.2

Description: phosphodiesterase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ch3-1	6595375	6598315	+	Sp3g18520.v2.2

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.31	81,400.70 Da	37.45	88.75	-0.07

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd08604	GDPD_SHV3_repeat_2	337	644	6.00619E-150	-
CDD	cd08603	GDPD_SHV3_repeat_1	33	319	4.70143E-163	-
Pfam	PF03009	Glycerophosphoryl diester phosphodiesterase family	344	640	1.1E-25	IPR030395
SUPERFAMILY	SSF51695	PLC-like phosphodiesterases	337	645	5.76E-37	IPR017946
SUPERFAMILY	SSF51695	PLC-like phosphodiesterases	32	318	5.49E-41	IPR017946
Gene3D	G3DSA:3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	32	319	2.8E-36	IPR017946
Gene3D	G3DSA:3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	337	645	9.0E-43	IPR017946
ProSiteProfiles	PS51704	GP-PDE domain profile.	33	320	28.710302	IPR030395
ProSiteProfiles	PS51704	GP-PDE domain profile.	337	645	34.296928	IPR030395

Gene Ontology

Biological Process:

GO:0006629 (lipid metabolic process)

Molecular Function:

GO:0008081 (phosphoric diester hydrolase activity)

KEGG Pathway

KO Term:

K01126 (glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46])

Pathway:

ko00564 (Glycerophospholipid metabolism) map00564 (Glycerophospholipid metabolism)

Reaction:

R01030 (sn-Glycero-3-phosphocholine + H2O <=> Choline + sn-Glycerol 3-phosphate) R01470 (sn-Glycero-3-phosphoethanolamine + H2O <=> Ethanolamine + sn-Glycerol 3-phosphate)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G20520.1	SHV3-like 3.
RefSeq	XP_006406374.2	glycerophosphodiester phosphodiesterase GDPDL5 [Eutrema salsugineum]
Swiss-Prot	F4JEQ1	Glycerophosphodiester phosphodiesterase GDPDL5 OS=Arabidopsis thaliana OX=3702 GN=GDPDL5 PE=2 SV=1
TrEMBL	V4LZ74	glycerophosphodiester phosphodiesterase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10020151mg PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg20162, jg24582, jg38412, jg3968
Aizoaceae	Mesembryanthemum crystallinum	3	gene_7182, gene_7183, gene_8905
Amaranthaceae	Atriplex hortensis	2	Ah008991, Ah018897
Amaranthaceae	Beta vulgaris	3	BVRB_4g089710, BVRB_4g089720, BVRB_8g192510
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg18411, Sbi_jg18412, Sbi_jg25424, Sbi_jg36816 ... Sbi_jg36817, Sbi_jg9265
Amaranthaceae	Salicornia europaea	4	Seu_jg19327, Seu_jg2604, Seu_jg4729, Seu_jg4731
Amaranthaceae	Suaeda aralocaspica	4	GOSA_00011111, GOSA_00017391, GOSA_00017392, GOSA_00017393
Amaranthaceae	Suaeda glauca	5	Sgl23498, Sgl28628, Sgl28629, Sgl41838, Sgl46638
Amaranthaceae	Chenopodium album	10	gene:ENSEOMG00000008792, gene:ENSEOMG00000010910 ... gene:ENSEOMG00000011018, gene:ENSEOMG00000028441, gene:ENSEOMG00000030652, gene:ENSEOMG00000032962, gene:ENSEOMG00000038408, gene:ENSEOMG00000041343, gene:ENSEOMG00000042039, gene:ENSEOMG00000044067
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2BG0001770, CQ.Regalona.r1.4BG0025310 ... CQ.Regalona.r1.8AG0023490, CQ.Regalona.r1.8BG0018880
Anacardiaceae	Pistacia vera	4	pistato.v30153960, pistato.v30155660, pistato.v30266220 ... pistato.v30266260
Apiaceae	Apium graveolens	3	Ag2G00436, Ag3G00491, Ag6G02536
Arecaceae	Cocos nucifera	5	COCNU_01G007040, COCNU_01G010820, COCNU_01G012280 ... COCNU_11G007630, COCNU_11G010750
Arecaceae	Phoenix dactylifera	5	gene-LOC103702318, gene-LOC103713563, gene-LOC103714246 ... gene-LOC103719050, gene-LOC103722432
Asparagaceae	Asparagus officinalis	4	AsparagusV1_01.251.V1.1, AsparagusV1_05.1265.V1.1 ... AsparagusV1_05.3049.V1.1, AsparagusV1_05.3235.V1.1
Asteraceae	Flaveria trinervia	4	Ftri15G05747, Ftri16G33942, Ftri2G29718, Ftri4G31944
Brassicaceae	Arabidopsis thaliana	7	AT1G66970.2, AT1G66980.1, AT3G20520.1, AT4G26690.1 ... AT5G55480.1, AT5G58050.1, AT5G58170.1
Brassicaceae	Eutrema salsugineum	5	Thhalv10012748m.g.v1.0, Thhalv10012762m.g.v1.0 ... Thhalv10018170m.g.v1.0, Thhalv10020151m.g.v1.0, Thhalv10024494m.g.v1.0
Brassicaceae	Schrenkiella parvula	5	Sp3g18520.v2.2, Sp5g21930.v2.2, Sp6g17360.v2.2 ... Sp7g24660.v2.2, SpUn0870_0010.v2.2
Brassicaceae	Brassica nigra	16	BniB01g043270.2N, BniB02g034150.2N, BniB02g037430.2N ... BniB02g082560.2N, BniB05g010710.2N, BniB05g037630.2N, BniB05g037700.2N, BniB05g062990.2N, BniB08g013440.2N, BniB08g015200.2N, BniB08g024300.2N, BniB08g035060.2N, BniB08g049980.2N, BniB08g050010.2N, BniB08g050590.2N, BniB08g050620.2N
Casuarinaceae	Casuarina equisetifolia	3	Ceq01G1400, Ceq01G1401, Ceq03G2532
Casuarinaceae	Casuarina glauca	5	Cgl01G1572, Cgl01G1573, Cgl01G1579, Cgl01G1580, Cgl03G2672
Cymodoceaceae	Cymodocea nodosa	7	gene.Cymno02g05680, gene.Cymno02g05690, gene.Cymno02g05700 ... gene.Cymno02g05710, gene.Cymno03g09360, gene.Cymno04g07810, gene.Cymno17g05020
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate01g18120, gene.Thate03g20930, gene.Thate07g08490
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-1466, nbisL1-mrna-9061
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG05.1959, evm.TU.LG07.207
Plantaginaceae	Plantago ovata	2	Pov_00000908, Pov_00035939
Plumbaginaceae	Limonium bicolor	3	Lb1G03382, Lb2G10920, Lb5G28127
Poaceae	Echinochloa crus-galli	15	AH01.4089, AH06.2401, AH07.2400, AH07.634, AH08.1994 ... BH06.2196, BH07.2217, BH07.760, BH08.2095, BH09.1442, CH01.1596, CH06.2415, CH07.2285, CH08.2272, CH09.1549
Poaceae	Eleusine coracana subsp. coracana	8	gene-QOZ80_2AG0104280, gene-QOZ80_2AG0135770 ... gene-QOZ80_2BG0157640, gene-QOZ80_2BG0191300, gene-QOZ80_4AG0313930, gene-QOZ80_4BG0345100, gene-QOZ80_6BG0470650, gene-QOZ80_8AG0636350
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.1HG0081620.1, HORVU.MOREX.r3.2HG0174760.1 ... HORVU.MOREX.r3.6HG0575670.1, HORVU.MOREX.r3.6HG0589780.1, HORVU.MOREX.r3.7HG0679100.1
Poaceae	Lolium multiflorum	5	gene-QYE76_016133, gene-QYE76_021171, gene-QYE76_023344 ... gene-QYE76_029936, gene-QYE76_044669
Poaceae	Oryza coarctata	9	Oco03G004460, Oco03G013950, Oco04G004450, Oco04G014340 ... Oco07G008330, Oco08G008230, Oco10G006000, Oco15G011480, Oco16G011090
Poaceae	Oryza sativa	5	LOC_Os02g09450.1, LOC_Os02g37590.1, LOC_Os04g39610.1 ... LOC_Os08g39350.1, LOC_Os12g27102.1
Poaceae	Paspalum vaginatum	5	gene-BS78_04G065900, gene-BS78_04G178700 ... gene-BS78_06G130900, gene-BS78_07G181800, gene-BS78_10G202100
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0102659, Pt_Chr0202239, Pt_Chr0204385, Pt_Chr0302388 ... Pt_Chr0403838, Pt_Chr0403884, Pt_Chr0503953
Poaceae	Sporobolus alterniflorus	9	Chr06G008760, Chr09G013060, Chr13G008880, Chr13G008890 ... Chr15G010310, Chr16G016800, Chr17G016160, Chr23G010850, Chr26G008880
Poaceae	Thinopyrum elongatum	5	Tel1E01G541200, Tel2E01G581500, Tel6E01G346800 ... Tel6E01G400200, Tel7E01G430500
Poaceae	Triticum dicoccoides	10	gene_TRIDC1AG052040, gene_TRIDC1BG059510 ... gene_TRIDC2AG048610, gene_TRIDC2BG051080, gene_TRIDC6AG025050, gene_TRIDC6AG030590, gene_TRIDC6BG031030, gene_TRIDC6BG037850, gene_TRIDC7AG031200, gene_TRIDC7BG023400
Poaceae	Triticum aestivum	15	TraesCS1A02G353200.1, TraesCS1B02G368600.1 ... TraesCS1D02G357000.1, TraesCS2A02G330200.1, TraesCS2B02G352000.1, TraesCS2D02G332500.1, TraesCS6A02G174100.1, TraesCS6A02G200600.1, TraesCS6B02G202700.1, TraesCS6B02G226700.2, TraesCS6D02G163200.1, TraesCS6D02G189300.1, TraesCS7A02G243900.3, TraesCS7B02G147500.1, TraesCS7D02G242500.1
Poaceae	Zea mays	8	Zm00001eb034650_P001, Zm00001eb183390_P001 ... Zm00001eb199730_P001, Zm00001eb206420_P001, Zm00001eb234640_P001, Zm00001eb245640_P002, Zm00001eb327550_P001, Zm00001eb424720_P001
Poaceae	Zoysia japonica	5	nbis-gene-18673, nbis-gene-29793, nbis-gene-33552 ... nbis-gene-44144, nbis-gene-7424
Poaceae	Zoysia macrostachya	6	Zma_g12336, Zma_g13786, Zma_g15084, Zma_g16584, Zma_g21448 ... Zma_g23212
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.10, evm.TU.LG02.548, evm.TU.LG09.2124 ... evm.TU.LG18.1088, evm.TU.LG20.783
Posidoniaceae	Posidonia oceanica	3	gene.Posoc01g17140, gene.Posoc02g22990, gene.Posoc02g23060
Rhizophoraceae	Bruguiera sexangula	4	evm.TU.Scaffold_10_RagTag.137, evm.TU.Scaffold_4_RagTag.2198 ... evm.TU.Scaffold_7_RagTag.118, evm.TU.Scaffold_8_RagTag.1609
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-13925, nbisL1-mrna-19615, nbisL1-mrna-19617 ... nbisL1-mrna-8727
Rhizophoraceae	Ceriops tagal	4	nbisL1-mrna-13184, nbisL1-mrna-21273, nbisL1-mrna-407 ... nbisL1-mrna-4697
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15083, nbisL1-mrna-16573, nbisL1-mrna-22302 ... nbisL1-mrna-4949
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000018l.54, evm.TU.utg000028l.68 ... evm.TU.utg000033l.85
Rhizophoraceae	Kandelia obovata	4	Maker00001477, Maker00003575, Maker00010468, Maker00015069
Rhizophoraceae	Rhizophora apiculata	4	nbisL1-mrna-16685, nbisL1-mrna-17477, nbisL1-mrna-8032 ... nbisL1-mrna-9397
Rhizophoraceae	Rhizophora mangle	4	nbisL1-mrna-14529, nbisL1-mrna-22632, nbisL1-mrna-22666 ... nbisL1-mrna-9195
Salicaceae	Populus euphratica	6	populus_peu05620, populus_peu12254, populus_peu12255 ... populus_peu26628, populus_peu26629, populus_peu28344
Solanaceae	Lycium barbarum	4	gene-LOC132616891, gene-LOC132623903, gene-LOC132636311 ... gene-LOC132638541
Solanaceae	Solanum chilense	3	SOLCI001063200, SOLCI006781900, SOLCI007178300
Solanaceae	Solanum pennellii	4	gene-LOC107005499, gene-LOC107010467, gene-LOC107010530 ... gene-LOC107025846
Tamaricaceae	Reaumuria soongarica	3	gene_13102, gene_17857, gene_8133
Tamaricaceae	Tamarix chinensis	2	TC05G2666, TC06G0433
Zosteraceae	Zostera marina	5	Zosma01g03940.v3.1, Zosma01g34400.v3.1, Zosma01g39610.v3.1 ... Zosma02g23170.v3.1, Zosma05g21150.v3.1